PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139354.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 594aa    MW: 66514.5 Da    PI: 7.3734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000256183123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC +C++ F ++ n++rH r+H
  XP_009139354.1 61 HKCDKCTREFCSPVNFRRHKRMH 83
                    79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.976188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MELVKQEGND SLDMLIRRAV GKDPFFTFHR PENSPVQLFQ LLNTLERPGW PLLAPLKIQL  60
HKCDKCTREF CSPVNFRRHK RMHRPSRKPE MYSGKERDAL GAFWDELSAF DAKEILSLKN  120
MMLENVRGES VESGLISLIE NPGYTALPQY YLRAGSDLLD IIQGRPLRFP IYSNQLFSIL  180
DDASEKTFMT NEAASIQKYI FDGENGKNVL EAKNVVACAS FLLEQQLIKA WLADKDAEAL  240
RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQRVKDQT KDAKEDESTT SEEQQQSPAE  300
SSRPLSVASD TEAQRSDSIP TEDSSSLEEP QVLEIDNERN GETQAPMVDG AGFGNGQNME  360
RRSGRREMER SQYGMPNGFH GNHAPKLGGM RKNGTNRDAR ANTTKVWSRK ADNPKSISPD  420
AVVAEPEQTK NSEVLIGSVS VTIGNSCLSG EHNQAKCSSE EEGRTKAVEA KPTSEQSTAE  480
VSRPVSSQGR KVSTSNGNTD KKDEHSSSTQ PEVKTANHIS LQFNNHEAKA FLAKRWKEAI  540
SAEHVTLVLS QETDMPGNNT HESSNGVITA ARPKHRMKPE KGANVKYVPK QKIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261268ERKKRKKL
2263267KKRKK
3266276KKLRQKEQRVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139354.10.0PREDICTED: uncharacterized protein LOC103863353
TrEMBLM4DBP30.0M4DBP3_BRARP; Uncharacterized protein
STRINGBra013903.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein